The basic assembler that can be used for any standard CG scheme with flux and source. More...

#include <variables.hh>

Inheritance diagram for DiFfRG::Variables::Assembler< Model_ >:

Public Types
using	Model = Model_

using	NumberType = double

using	VectorType = Vector<double>

using	Components = typename Model_::Components

Public Types inherited from DiFfRG::AbstractAssembler< Vector< double >, SparseMatrix< double >, 0 >
using	NumberType

Public Member Functions
	Assembler (Model &model, const JSONValue &json)

virtual void	reinit_vector (VectorType &vec) const override
	Reinitialize an arbitrary vector so that it has the correct size and structure.

virtual IndexSet	get_differential_indices () const override
	Obtain the dofs which contain time derivatives.

virtual void	attach_data_output (DataOutput< dim, VectorType > &data_out, const VectorType &solution, const VectorType &variables, const VectorType &dt_solution=VectorType(), const VectorType &residual=VectorType())
	Attach any data output to the DataOutput object provided. This can be used to extract additional data from the solution and write it to the output file. This includes both derivatives and other spatial functions, as well as single values that can be appended to the .csv file.

virtual void	reinit () override
	Reinitialize the assembler. This is necessary if the mesh has changed, e.g. after a mesh refinement.

virtual void	set_time (double t) override
	Set the current time. The assembler should usually just forward this to the numerical model.

virtual const SparsityPattern &	get_sparsity_pattern_jacobian () const override
	Obtain the sparsity pattern of the jacobian matrix.

virtual const SparseMatrix< NumberType > &	get_mass_matrix () const override
	Obtain the mass matrix.

virtual void	residual_variables (VectorType &residual, const VectorType &variables, const VectorType &) override
	When coupling the spatial discretization to additional variables, this function should calculate the residual for the additional variables.

virtual void	jacobian_variables (FullMatrix< NumberType > &jacobian, const VectorType &variables, const VectorType &) override

void	readouts (DataOutput< dim, VectorType > &data_out, const VectorType &, const VectorType &variables) const

virtual void	mass (VectorType &, const VectorType &, const VectorType &, NumberType) override

virtual void	residual (VectorType &, const VectorType &, NumberType, const VectorType &, NumberType, const VectorType &variables=VectorType()) override

virtual void	jacobian_mass (SparseMatrix< NumberType > &, const VectorType &, const VectorType &, NumberType, NumberType) override

virtual void	jacobian (SparseMatrix< NumberType > &, const VectorType &, NumberType, const VectorType &, NumberType, NumberType, const VectorType &variables=VectorType()) override

void	log (const std::string logger) const

double	average_time_residual_assembly ()

uint	num_residuals () const

double	average_time_jacobian_assembly ()

uint	num_jacobians () const

Public Member Functions inherited from DiFfRG::AbstractAssembler< Vector< double >, SparseMatrix< double >, 0 >
virtual void	jacobian_variables (FullMatrix< NumberType > &jacobian, const Vector< double > &variables, const Vector< double > &spatial_solution)
	When coupling the spatial discretization to additional variables, this function should calculate the jacobian for the additional variables.

void	mass (Vector< double > &mass, const Vector< double > &solution_global, NumberType weight)
	Calculates the mass \(m_i(u)\) for an ODE.

virtual void	mass (Vector< double > &mass, const Vector< double > &solution_global, const Vector< double > &solution_global_dot, NumberType weight)=0
	Calculates the mass \(m(u, \partial_t u)\) for a DAE.

void	residual (Vector< double > &residual, const Vector< double > &solution_global, NumberType weight, NumberType weight_mass, const Vector< double > &variables=Vector< double >())
	Calculates the residual for an ODE.

virtual void	residual (Vector< double > &residual, const Vector< double > &solution_global, NumberType weight, const Vector< double > &solution_global_dot, NumberType weight_mass, const Vector< double > &variables=Vector< double >())=0
	Calculates the residual for a DAE.

void	jacobian_mass (SparseMatrix< double > &jacobian, const Vector< double > &solution_global, NumberType mass_weight=1.)
	Calculates the jacobian of the mass function for an ODE.

virtual void	jacobian_mass (SparseMatrix< double > &jacobian, const Vector< double > &solution_global, const Vector< double > &solution_global_dot, NumberType alpha=1., NumberType beta=1.)=0
	Calculates the jacobian of the mass function for a DAE.

void	jacobian (SparseMatrix< double > &jacobian, const Vector< double > &solution_global, NumberType weight, NumberType mass_weight, const Vector< double > &variables=Vector< double >())
	Calculates the jacobian of the residual function for an ODE.

virtual void	jacobian (SparseMatrix< double > &jacobian, const Vector< double > &solution_global, NumberType weight, const Vector< double > &solution_global_dot, NumberType alpha, NumberType beta, const Vector< double > &variables=Vector< double >())=0
	Calculates the jacobian of the residual function for a DAE.

Static Public Attributes
static constexpr uint	dim = 0

Private Attributes
Model &	model

uint	threads

SparsityPattern	sparsity_pattern_mass

SparsityPattern	sparsity_pattern_jacobian

SparseMatrix< NumberType >	mass_matrix

std::vector< double >	timings_residual

std::vector< double >	timings_jacobian

Static Private Attributes
static constexpr int	nothing = 0

Detailed Description

template<typename Model_>
class DiFfRG::Variables::Assembler< Model_ >

The basic assembler that can be used for any standard CG scheme with flux and source.

Template Parameters

Model The model class which contains the physical equations.

Member Typedef Documentation

◆ Components

template<typename Model_ >

using DiFfRG::Variables::Assembler< Model_ >::Components = typename Model_::Components

◆ Model

template<typename Model_ >

using DiFfRG::Variables::Assembler< Model_ >::Model = Model_

◆ NumberType

template<typename Model_ >

using DiFfRG::Variables::Assembler< Model_ >::NumberType = double

◆ VectorType

template<typename Model_ >

using DiFfRG::Variables::Assembler< Model_ >::VectorType = Vector<double>

Constructor & Destructor Documentation

◆ Assembler()

template<typename Model_ >

DiFfRG::Variables::Assembler< Model_ >::Assembler	(	Model &	model,
		const JSONValue &	json )

inline

Member Function Documentation

◆ attach_data_output()

template<typename Model_ >

virtual void DiFfRG::Variables::Assembler< Model_ >::attach_data_output	(	DataOutput< dim, VectorType > &	data_out,
		const VectorType &	solution,
		const VectorType &	variables,
		const VectorType &	dt_solution = VectorType(),
		const VectorType &	residual = VectorType() )

inlinevirtual

Attach any data output to the DataOutput object provided. This can be used to extract additional data from the solution and write it to the output file. This includes both derivatives and other spatial functions, as well as single values that can be appended to the .csv file.

Parameters

data_out	The DataOutput object to attach the data to
solution	The spatial solution vector
variables	The additional variables vector

Implements DiFfRG::AbstractAssembler< Vector< double >, SparseMatrix< double >, 0 >.

◆ average_time_jacobian_assembly()

template<typename Model_ >

double DiFfRG::Variables::Assembler< Model_ >::average_time_jacobian_assembly ( )

inline

◆ average_time_residual_assembly()

template<typename Model_ >

double DiFfRG::Variables::Assembler< Model_ >::average_time_residual_assembly ( )

inline

◆ get_differential_indices()

template<typename Model_ >

virtual IndexSet DiFfRG::Variables::Assembler< Model_ >::get_differential_indices ( ) const

inlineoverridevirtual

Obtain the dofs which contain time derivatives.

Returns: IndexSet The indices of the dofs which contain time derivatives

Implements DiFfRG::AbstractAssembler< Vector< double >, SparseMatrix< double >, 0 >.

◆ get_mass_matrix()

template<typename Model_ >

virtual const SparseMatrix< NumberType > & DiFfRG::Variables::Assembler< Model_ >::get_mass_matrix ( ) const

inlineoverridevirtual

Obtain the mass matrix.

Returns: const SparseMatrixType& The mass matrix

Implements DiFfRG::AbstractAssembler< Vector< double >, SparseMatrix< double >, 0 >.

◆ get_sparsity_pattern_jacobian()

template<typename Model_ >

virtual const SparsityPattern & DiFfRG::Variables::Assembler< Model_ >::get_sparsity_pattern_jacobian ( ) const

inlineoverridevirtual

Obtain the sparsity pattern of the jacobian matrix.

Returns: const SparsityPattern<VectorType>& The sparsity pattern of the jacobian matrix

Implements DiFfRG::AbstractAssembler< Vector< double >, SparseMatrix< double >, 0 >.

◆ jacobian()

template<typename Model_ >

virtual void DiFfRG::Variables::Assembler< Model_ >::jacobian	(	SparseMatrix< NumberType > &	,
		const VectorType &	,
		NumberType	,
		const VectorType &	,
		NumberType	,
		NumberType	,
		const VectorType &	variables = VectorType() )

inlineoverridevirtual

◆ jacobian_mass()

template<typename Model_ >

virtual void DiFfRG::Variables::Assembler< Model_ >::jacobian_mass	(	SparseMatrix< NumberType > &	,
		const VectorType &	,
		const VectorType &	,
		NumberType	,
		NumberType	)

inlineoverridevirtual

◆ jacobian_variables()

template<typename Model_ >

virtual void DiFfRG::Variables::Assembler< Model_ >::jacobian_variables	(	FullMatrix< NumberType > &	jacobian,
		const VectorType &	variables,
		const VectorType &	)

inlineoverridevirtual

◆ log()

template<typename Model_ >

void DiFfRG::Variables::Assembler< Model_ >::log ( const std::string logger ) const

inline

◆ mass()

template<typename Model_ >

virtual void DiFfRG::Variables::Assembler< Model_ >::mass	(	VectorType &	,
		const VectorType &	,
		const VectorType &	,
		NumberType	)

inlineoverridevirtual

◆ num_jacobians()

template<typename Model_ >

uint DiFfRG::Variables::Assembler< Model_ >::num_jacobians ( ) const

inline

◆ num_residuals()

template<typename Model_ >

uint DiFfRG::Variables::Assembler< Model_ >::num_residuals ( ) const

inline

◆ readouts()

template<typename Model_ >

void DiFfRG::Variables::Assembler< Model_ >::readouts	(	DataOutput< dim, VectorType > &	data_out,
		const VectorType &	,
		const VectorType &	variables ) const

inline

◆ reinit()

template<typename Model_ >

virtual void DiFfRG::Variables::Assembler< Model_ >::reinit ( )

inlineoverridevirtual

Reinitialize the assembler. This is necessary if the mesh has changed, e.g. after a mesh refinement.

Implements DiFfRG::AbstractAssembler< Vector< double >, SparseMatrix< double >, 0 >.

◆ reinit_vector()

template<typename Model_ >

virtual void DiFfRG::Variables::Assembler< Model_ >::reinit_vector ( VectorType & vector ) const

inlineoverridevirtual

Reinitialize an arbitrary vector so that it has the correct size and structure.

Parameters

vector The vector to be reinitialized

Implements DiFfRG::AbstractAssembler< Vector< double >, SparseMatrix< double >, 0 >.

◆ residual()

template<typename Model_ >

virtual void DiFfRG::Variables::Assembler< Model_ >::residual	(	VectorType &	,
		const VectorType &	,
		NumberType	,
		const VectorType &	,
		NumberType	,
		const VectorType &	variables = VectorType() )

inlineoverridevirtual

◆ residual_variables()

template<typename Model_ >

virtual void DiFfRG::Variables::Assembler< Model_ >::residual_variables	(	VectorType &	residual,
		const VectorType &	variables,
		const VectorType &	spatial_solution )

inlineoverridevirtual

When coupling the spatial discretization to additional variables, this function should calculate the residual for the additional variables.

Parameters

residual	The residual vector of the additional variables
variables	The current additional variables vector
spatial_solution	The spatial solution vector, which is needed for the calculation of the residual

Reimplemented from DiFfRG::AbstractAssembler< Vector< double >, SparseMatrix< double >, 0 >.

◆ set_time()

template<typename Model_ >

virtual void DiFfRG::Variables::Assembler< Model_ >::set_time ( double t )

inlineoverridevirtual

Set the current time. The assembler should usually just forward this to the numerical model.

Parameters

t	The current time

Implements DiFfRG::AbstractAssembler< Vector< double >, SparseMatrix< double >, 0 >.

Member Data Documentation

◆ dim

template<typename Model_ >

uint DiFfRG::Variables::Assembler< Model_ >::dim = 0

staticconstexpr

◆ mass_matrix

template<typename Model_ >

SparseMatrix<NumberType> DiFfRG::Variables::Assembler< Model_ >::mass_matrix

private

◆ model

template<typename Model_ >

Model& DiFfRG::Variables::Assembler< Model_ >::model

private

◆ nothing

template<typename Model_ >

int DiFfRG::Variables::Assembler< Model_ >::nothing = 0

staticconstexprprivate

◆ sparsity_pattern_jacobian

template<typename Model_ >

SparsityPattern DiFfRG::Variables::Assembler< Model_ >::sparsity_pattern_jacobian

private

◆ sparsity_pattern_mass

template<typename Model_ >

SparsityPattern DiFfRG::Variables::Assembler< Model_ >::sparsity_pattern_mass

private

◆ threads

template<typename Model_ >

uint DiFfRG::Variables::Assembler< Model_ >::threads

private

◆ timings_jacobian

template<typename Model_ >

std::vector<double> DiFfRG::Variables::Assembler< Model_ >::timings_jacobian

private

◆ timings_residual

template<typename Model_ >

std::vector<double> DiFfRG::Variables::Assembler< Model_ >::timings_residual

private

The documentation for this class was generated from the following file:

/home/runner/work/DiFfRG/DiFfRG/DiFfRG/include/DiFfRG/discretization/variables/assembler/variables.hh

Public Types

Public Member Functions

Static Public Attributes

Private Attributes

Static Private Attributes

Detailed Description

Member Typedef Documentation

◆ Components

◆ Model

◆ NumberType

◆ VectorType

Constructor & Destructor Documentation

◆ Assembler()

Member Function Documentation

◆ attach_data_output()

◆ average_time_jacobian_assembly()

◆ average_time_residual_assembly()

◆ get_differential_indices()

◆ get_mass_matrix()

◆ get_sparsity_pattern_jacobian()

◆ jacobian()

◆ jacobian_mass()

◆ jacobian_variables()

◆ log()

◆ mass()

◆ num_jacobians()

◆ num_residuals()

◆ readouts()

◆ reinit()

◆ reinit_vector()

◆ residual()

◆ residual_variables()

◆ set_time()

Member Data Documentation

◆ dim

◆ mass_matrix

◆ model

◆ nothing

◆ sparsity_pattern_jacobian

◆ sparsity_pattern_mass

◆ threads

◆ timings_jacobian

◆ timings_residual